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  • chrisW
    replied
    similar install problems

    Greetings, I am novice as novice can be. I have a rudimentary knowledge of things UNIX, so understanding the error messages is currently difficult. I had a similar error wrt -m64. I removed that from the CFLAGS line and now have different errors. To whit:

    Error code 127, which follows immediately after 2 lines that start "gcc" and two lines that appear to be instructing some change to

    ar -cru libbwtgen.a bwt_gen.o QSufSort.o

    and then the following Stop messages:

    Stop in .../bwa-0.5.7/bwt_gen (line 18 of Makefile) Error code 1

    Stop in..../bwa-0.5.7 (line 33 of Makefile)

    Any help would be much appreciated!

    Leave a comment:


  • Jurek
    replied
    It worked. Thank you!

    Leave a comment:


  • lh3
    replied
    Remove -m64 from the "CFLAGS" line in Makefile. Nonetheless, bwa works better on 64-bit machines.

    Leave a comment:


  • Jurek
    started a topic BWA installation failure

    BWA installation failure

    Hello World,

    I downloaded the bwa version 5.7 and cannot compile it.

    [Jurek@fg-pc22 bwa-0.5.7]$ make
    make[1]: Entering directory `/home/Jurek/Desktop/bwa2/bwa-0.5.7'
    make[1]: Nothing to be done for `lib'.
    make[1]: Leaving directory `/home/Jurek/Desktop/bwa2/bwa-0.5.7'
    make[1]: Entering directory `/home/Jurek/Desktop/bwa2/bwa-0.5.7/bwt_gen'
    gcc -c -g -Wall -O2 -m64 -DHAVE_PTHREAD bwt_gen.c -o bwt_gen.o
    bwt_gen.c:1: sorry, unimplemented: 64-bit mode not compiled in
    make[1]: *** [bwt_gen.o] Error 1
    make[1]: Leaving directory `/home/Jurek/Desktop/bwa2/bwa-0.5.7/bwt_gen'
    make: *** [lib-recur] Error 1

    What am I doing wrong (I appreciate it may be very simple)?

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