I have a sorted BAM indicated by "SO: coordinate" in the header.
When i use fillmd on the BAM, it seems to have unsorted my BAM. The first read start from chr10 instead of chr1. Does anyone experience the same issue?
When i use fillmd on the BAM, it seems to have unsorted my BAM. The first read start from chr10 instead of chr1. Does anyone experience the same issue?