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  • Problem running Velvetg

    Hello!
    I'm trying to run Oases/Velvet but I got an error when running Velvetg, a library or something from a library is missing. I'm running everything on a cluster (it uses SLURM) and I do not have root permisons.
    This is what I got

    /home/hpc/uj502/di29kiz/velvet_1.2.10/velvetg: /usr/lib64/libgomp.so.1: version `GOMP_4.0' not found

    I have to make Oases/Velvet run! Please help!
    Thanks

  • #2
    Check the output of

    Code:
    $ ldd velvetg
    Check if you have multiple versions of OMP library installed.

    Then try the modification to LD_LIBRARY_PATH as suggested in this thread: https://gcc.gnu.org/bugzilla/show_bug.cgi?id=57123

    Comment


    • #3
      After ldd velvetg I got this

      di29kiz@lxa191:~/velvet_1.2.10> ldd velvetg
      linux-vdso.so.1 => (0x00007fff069ff000)
      libz.so.1 => /lib64/libz.so.1 (0x00007fd8d89d8000)
      libm.so.6 => /lib64/libm.so.6 (0x00007fd8d875e000)
      libgomp.so.1 => /lrz/sys/compilers/gcc/4.9.2/lib64/libgomp.so.1 (0x00007fd8d8547000)
      libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fd8d832a000)
      libc.so.6 => /lib64/libc.so.6 (0x00007fd8d7fb0000)
      librt.so.1 => /lib64/librt.so.1 (0x00007fd8d7da7000)
      /lib64/ld-linux-x86-64.so.2 (0x00007fd8d8c25000)

      which one is the good one?

      Comment


      • #4
        Can you try adding this to your LD_LIBRARY_PATH (since your OMP library is not in /usr/lib64)?

        /lrz/sys/compilers/gcc/4.9.2/lib64/libgomp.so.1

        Comment


        • #5
          Oh!!! Now I get it!
          haha thanks
          I will try that!

          Comment

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