Unconfigured Ad

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts
  • morning latte
    Member
    • Jun 2013
    • 91

    Command for vlookup function

    Hello experts,

    I have large text files that need to be arranged using a function like excel's vlookup. I have been playing with awk command but didn't really come up with a solution. Could anyone please help me out? Below are my datasets and expected output. Any help would be greatly appreciated.

    <File 1>
    contig-100_1 5
    contig-100_30 10
    contig-100_50 20
    contig-100_40 15
    contig-100_60 25

    <File 2>
    contig-100_1 "Bacteria"
    contig-100_50 "Bacteria A"
    contig-100_60 "Bacteria A, Fungi B"

    <Expected output>
    contig-100_1 5 Bacteria
    contig-100_30 10 NA
    contig-100_50 20 Bacteria A
    contig-100_40 15 NA
    contig-100_60 25 Bacteria A, Fungi B
  • lindenb
    Senior Member
    • Apr 2010
    • 143

    #2
    you're looking for the 'join' command : http://linux.die.net/man/1/join

    Comment

    Latest Articles

    Collapse

    • GATTACAT
      Reply to Nine Things a Sample Prep Scientist Thinks About Before Sequencing
      by GATTACAT
      Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
      07-01-2026, 11:43 AM
    • SEQadmin2
      Nine Things a Sample Prep Scientist Thinks About Before Sequencing
      by SEQadmin2


      I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.

      Here are nine questions we think about, in roughly the order they matter, before...
      06-18-2026, 07:11 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by SEQadmin2, 07-02-2026, 11:08 AM
    0 responses
    23 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 06-30-2026, 05:37 AM
    0 responses
    23 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 06-26-2026, 11:10 AM
    0 responses
    23 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 06-17-2026, 06:09 AM
    0 responses
    55 views
    0 reactions
    Last Post SEQadmin2  
    Working...