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  • sublimetech
    started a topic help an undergraduate with his project

    help an undergraduate with his project

    Hi,

    I am an undergraduate student in bioinformatics and I am looking for some advise on a project I am working on.

    I have multiple samples from a cancer. The goal is to get the lncRNA and perform a differential expression analysis and find any correlation with the coding genes in the samples.

    I have read multiple papers on the subject and I have constructed a pipeline to do this: bowtie-> cufflinks -> cuffmerge -> get lncRNA -> cuffdiff.
    Can anyone provide some feedback on this pipeline?

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