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  • cordsp
    Junior Member
    • Sep 2013
    • 5

    #1

    Genome in a Bottle Exome .bed file

    I have a whole genome NA12878 data set, I want to use the GCAT
    (http://www.bioplanet.com/gcat) analysis tool to compare variant accuracy.

    It uses a Genome in a Bottle Exome - I wonder if anybody knows where I can find the .bed file (target region) for this GIB exome so I can target my analysis properly.
    Thanks
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    I think they are here (please verify/confirm): ftp://ftp-trace.ncbi.nih.gov/giab/ft..._HG001/latest/

    They certainly have not made the file easy to find.

    Comment

    • cordsp
      Junior Member
      • Sep 2013
      • 5

      #3
      Thank you! It looks right - I'll try it out

      Comment

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