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  • tomkina
    Junior Member
    • Oct 2012
    • 1
    #1

    vcf-compare: tabix index is broken

    Hello,

    I'm trying to compare two vcf-files (see the attachment) using vcftools_0.1.12b. The files have one mismatched varinat (chr9). This variant is not found by vcf-compare tool since the tabix index is broken. What is the problem with my vcf file? Both vcf files were created with Ion PGM instruments.

    Thanks,
    Tamara
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