Trans-abyss help

[emalandrak]

Hello

I have some trouble running Trans-Abyss 1.5.2. After installing Abyss with:
sudo apt-get install abyss and running make in the prereqs folder, Trans-abyss outputs the following error:

Traceback (most recent call last):
File "./transabyss", line 19, in <module>
from utilities.adj_utils import has_edges
File "/home/genetic/Desktop/transabyss-1.5.2/utilities/adj_utils.py", line 10, in <module>
from igraph import Graph
ImportError: cannot import name Graph

Does anybody have an idea why this happens? I work in Ubuntu platform and I am not informatician.
Thank you in advance.

[GenoMax]

Looks like you are missing python-igraph: http://igraph.org/python/.

[emalandrak]

Dear GenoMAx

Thank you for your answer. I ran the dpkg command and igraph seems to be installed.

Package: python-igraph
Status: install ok installed
Priority: extra
Section: python
Installed-Size: 1492
Maintainer: Ubuntu Developers <[email protected]>
Architecture: amd64
Version: 0.6.5-1
Provides: python2.7-igraph
Depends: python (>= 2.7.1-0ubuntu2), python (<< 2.8), libc6 (>= 2.4), libigraph0
Description: High performance graph data structures and algorithms
Python interface to the igraph high performance graph library, primarily
aimed at complex network research and analysis.
.
Graph plotting functionality is provided by the Cairo library, so make
sure you install the Python bindings of Cairo if you want to generate
publication-quality graph plots.
Original-Maintainer: Debian Python Modules Team <[email protected]>
Homepage: http://igraph.sourceforge.net/

Do you have any other thoughts?
Thank you
Emmanouil

[GenoMax]

Do you know what version of python you are using on your system? Output for the following commands.

$ which python
$ python --version

[emalandrak]

Dear GenoMax

Its Python 2.7.6.

Emmanouil

[GenoMax]

That is the right python. Is that the only error you are seeing? Nothing else in the log?

Are you able to do?

$ python
>>> import igraph

[emalandrak]

I think its OK. No error with that. It seems that igraph is imported.

genetic@genetic-PC:~$ python
Python 2.7.6 (default, Mar 22 2014, 22:59:56)
[GCC 4.8.2] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import igraph
>>>

Yes that's the error with transabyss.
No errors with transabyss-analyze or transabyss-merge.