Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • How to read information from a kmer-distribution plot before denovo assembly

    Hi guys,

    I'm a dummy to this field. I know people always plot the kmer-distribution (using illumina hiseq reads or etc.) and can get a lot of information from the plot, e.g., the estimated genome size, repeat content, and heterozygous rate?

    Would you please help give a tutorial how to read (or calculate) these information steps by steps, assuming we've know the major peak, left or right secondary peak, and mer-length?

    Thanks
    SK

  • #2
    SK,

    Try looking at this thread, and let me know if the explanation is insufficient:

    Any topic/question that does not fit into the subcategories below. If you're unsure of where to put something, ask in here!

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Best Practices for Single-Cell Sequencing Analysis
      by seqadmin



      While isolating and preparing single cells for sequencing was historically the bottleneck, recent technological advancements have shifted the challenge to data analysis. This highlights the rapidly evolving nature of single-cell sequencing. The inherent complexity of single-cell analysis has intensified with the surge in data volume and the incorporation of diverse and more complex datasets. This article explores the challenges in analysis, examines common pitfalls, offers...
      06-06-2024, 07:15 AM
    • seqadmin
      Latest Developments in Precision Medicine
      by seqadmin



      Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

      Somatic Genomics
      “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
      05-24-2024, 01:16 PM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, Today, 07:23 AM
    0 responses
    8 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 06-17-2024, 06:54 AM
    0 responses
    11 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 06-14-2024, 07:24 AM
    0 responses
    24 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 06-13-2024, 08:58 AM
    0 responses
    17 views
    0 likes
    Last Post seqadmin  
    Working...
    X