Hi. Is there a way to calculate coverage over genes getting an output where you actually can read your gene ID? I am using DepthOfCoverage with GATK but I always end up with coverage over every single chrom position of my interval list but no gene name. Do you know a way to see also the gene name in you output?
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The complexity of cancer is clearly demonstrated in the diverse ecosystem of the tumor microenvironment (TME). The TME is made up of numerous cell types and its development begins with the changes that happen during oncogenesis. “Genomic mutations, copy number changes, epigenetic alterations, and alternative gene expression occur to varying degrees within the affected tumor cells,” explained Andrea O’Hara, Ph.D., Strategic Technical Specialist at Azenta. “As...-
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