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  • thiNGS
    Member
    • Sep 2014
    • 24

    #1

    coverage over genes using GenomeAnalysis TK

    Hi. Is there a way to calculate coverage over genes getting an output where you actually can read your gene ID? I am using DepthOfCoverage with GATK but I always end up with coverage over every single chrom position of my interval list but no gene name. Do you know a way to see also the gene name in you output?

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