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  • jaisask
    Junior Member
    • Jan 2015
    • 1

    #1

    awk help

    i am newbie in awk and bioinformatics.

    i have a tab deliminated text file. the format is as follows. 3 records, 4 fields separated by tabs
    SNP 100 101 102 103
    M1 a:5 b:4 a:26 b:3
    M2 a:4 b:45 a:6 b:18
    M3 a:50 b:40 a:26 b:30

    please help me in filtering the file based on number behind the colon [:].

    1) let's say, if the number after the colon [:] equal or more than 5, then just print "a" or "b"
    2)if the number after the colon [:] is less than 5 then print "X".


    Thanks in advance
    Last edited by jaisask; 01-18-2015, 11:14 AM.

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