I am trying to use cuffnorm after tophat and cuffquant. I am using the gencodevM3 annotation and have filtered it so that it only contains CDS and exon information. However, when I run cuffnorm on my samples it only writes information to the genes and isoform tables and leaves the CDS and tss tables empty. Does anyone have any ideas? Thanks
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Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
