sounds like homework
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It sounds easy. But I really have no idea about the score! How to calculate the score?
Which one is the most important, and which one is the second, of your 3 limitationsLast edited by Phoenix_ICE; 01-22-2015, 12:54 PM.
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A quick starting point
Here's a starting point for you. I copied the 23mer you provided 3 times with a slight modification to the first occurrence.
=== script.pl ======
Code:#!/usr/bin/env perl use Data::Dumper; my $sequence = 'ACGATCTTTGCCCCGACGTGATCGAGGTTTTTTTTTTTTTTCAGAGACCGAGATACGATCCCCCGACGTGATCGAGGACGATCCCCCGACGTGATCGAGG'; my @sequences = $sequence =~ /.{21}GG/g; print Dumper(\@sequences); __END__
$ perl script.pl
$VAR1 = [
'TCTTTGCCCCGACGTGATCGAGG',
'ACGATCCCCCGACGTGATCGAGG',
'ACGATCCCCCGACGTGATCGAGG'
];Last edited by rdeborja; 01-23-2015, 05:19 AM.
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