Dear members of seqanswers,
Do you know a tool for counting multiple aligned reads?
Currently I use the htseq-count tool, but it doesn't take into account this type of read.
I know cufflinks allows this kind of thing, but I do not like this tool, because for me it is a "black box".
There are some time ERANGE allowed to do this assigning multiple aligned reads in the proportion of single aligned reads in each respective region. I find it effective, unfortunately ERANGE is no longer maintained.
I thank you in advance for your help.
Best,
a.kmg
Do you know a tool for counting multiple aligned reads?
Currently I use the htseq-count tool, but it doesn't take into account this type of read.
I know cufflinks allows this kind of thing, but I do not like this tool, because for me it is a "black box".
There are some time ERANGE allowed to do this assigning multiple aligned reads in the proportion of single aligned reads in each respective region. I find it effective, unfortunately ERANGE is no longer maintained.
I thank you in advance for your help.
Best,
a.kmg
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