Hello,
I need to do variant calling in galaxy using GATK (Unified genotyper) but it keeps giving me error. I first treated the data in Picard (add or remove groups, paired end read fixer and removed duplicate) but it keeps failing inGATK. Can any please help me with a proper work flow for use of GATK in galaxy. Thank you
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The complexity of cancer is clearly demonstrated in the diverse ecosystem of the tumor microenvironment (TME). The TME is made up of numerous cell types and its development begins with the changes that happen during oncogenesis. “Genomic mutations, copy number changes, epigenetic alterations, and alternative gene expression occur to varying degrees within the affected tumor cells,” explained Andrea O’Hara, Ph.D., Strategic Technical Specialist at Azenta. “As...07-08-2024, 03:19 PM