Difference Values from Clustal Omega

Bara'a Al-Hammad

Member

Join Date: Feb 2014
Posts: 16

Difference Values from Clustal Omega

02-20-2015, 09:05 AM

How can I find difference values based on similarity distance matrices produced by clustal omega ?!

If I have a sample in percentage format like this :

Code:

Traes_2BL_B2871DAAB.1_1 100.000000 21.944035 22.133939 23.723042 19.750284 20.431328 20.885358 21.679909 
Traes_7BL_26A3CC41D.1_2 21.944035 100.000000 22.827688 21.796760 22.974963 20.324006 21.944035 24.889543 
Traes_5AL_DE0E4DC71.1_3 22.133939 22.827688 100.000000 21.152030 22.474032 17.387033 19.830028 20.963173 
Traes_2BS_D7A73A455.2_4 23.723042 21.796760 21.152030 100.000000 20.437018 24.361493 19.059107 19.436957 
OS01T0101800-01_5 19.750284 22.974963 22.474032 20.437018 100.000000 21.414538 20.094259 21.765210 
OS01T0103000-01_6 20.431328 20.324006 17.387033 24.361493 21.414538 100.000000 20.432220 20.432220 
OS01T0103050-01_7 20.885358 21.944035 19.830028 19.059107 20.094259 20.432220 100.000000 19.018898 
OS01T0103600-01_8 21.679909 24.889543 20.963173 19.436957 21.765210 20.432220 19.018898 100.000000

Can I simply say : Difference = (100-similarity value) ?!

Thanks in advance

Tags: clustal omega, distance matrix

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Difference Values from Clustal Omega

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