transcription factor binding site prediction software/server for Prokaryotic DNA

[shashankgupta]

Hi,

I have a Prokaryotic DNA sequence (fasta file format), i would like to predict transcription factor binding site ( TFBS) and ribosomal binding sites (RBS).

Is there an eay software/server which predicts TFBS and RBS.

I tried to use R package for TFBS prediction using biocLite("JASPAR2014"), but i don't understand it.

I am attaching the prokaryotic DNA sequence. sequence.txt

Best !

Shashank

[AndrewAdelaide]

I am currently struggling with a similar problem and have yet to find an answer. In searching online I came across mention of the following site Prodoric which is designed as "A comprehensive database about gene regulation and gene expression in prokaryotes." http://omictools.com/prodoric-tool but I can't get on the web server so I am unsure if it is still valid. Hopefully you can find something.