Hi there,
I am trying to run Trimmomatic-0.33 to trim illumina adaptors from paired end reads.
The command I am running is :
But I am getting the following error message:
I would be grateful for any assistance in interpreting this error message,
thankyou.
I am trying to run Trimmomatic-0.33 to trim illumina adaptors from paired end reads.
The command I am running is :
Code:
java -jar trimmomatic-0.33.jar PE -phred33 reads1.fastq reads2.fastq paired1.fastq unpaired1.fastq paired2.fastq unpaired2.fastq ILLUMINACLIP:Truseq_PE.fa:2:30:10:1:true
Code:
/usr/bin/java: line 1: PK: command not found /usr/bin/java: line 2:?x: command not found /usr/bin/java: line 3: syntax error near unexpected token `???D????{?T?.??ת?9??PK' /usr/bin/java: line 3:?x>F??\??META-INF/MANIFEST.MFM?=? w???GSS?V;7.ƕ?ҧ?h??{????F??N???R< ???>??~A?$??-U?ِ +???????i?}M??i@?F???;?????zC?K?X]?L?=g#?(???D????{?T?.??ת?9??PK'
thankyou.