Hi everyone,
I have a color space fasta file and i have created the index files using bowtie-build. I ran bowtie using
/share/bin/bowtie/bowtie -a -v2 -C --sam -f 0604_refMrna_index GFP_plus_20091102_F3.csfasta
It complains of:
Error: reads file does not look like a FASTA file
Command: /share/bin/bowtie/bowtie -a -v2 -C --sam -f 0604_refMrna_index GFP_plus_20091102_F3.csfasta
Can anyone help me with this?
Thanks,
Abby
I have a color space fasta file and i have created the index files using bowtie-build. I ran bowtie using
/share/bin/bowtie/bowtie -a -v2 -C --sam -f 0604_refMrna_index GFP_plus_20091102_F3.csfasta
It complains of:
Error: reads file does not look like a FASTA file
Command: /share/bin/bowtie/bowtie -a -v2 -C --sam -f 0604_refMrna_index GFP_plus_20091102_F3.csfasta
Can anyone help me with this?
Thanks,
Abby
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