Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • snp_analyser
    Junior Member
    • Jun 2010
    • 4

    #1

    Cufflinks sample file(test_data.sam) output

    I installed boost 1_43_0 and then cufflinks version 0.8.2 on my server. I'm testing the version of cufflinks that I compiled from source on the sample file from the cufflinks website (http://cufflinks.cbcb.umd.edu/tutorial.html).

    I'm getting the following output on my screen:

    -bash-3.2$ ./cufflinks test_data.sam
    Counting hits in map
    Total map density: 104.000000
    Processing bundle [ test_chromosome:52-550 ] with 99 non-redundant alignments

    Is this output right? It doesn't match the output in the tutorial page mentioned above.

    Thanks

Latest Articles

Collapse

  • kinpict.com
    Reply to 16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
    by kinpict.com
    The part about this topic feels surprisingly grounded, and the details on the page is the bit that made me slow down. I’d keep <a href="https://kinpict.com/">ai family photo generator</a> bookmarked for later.
    Today, 06:37 PM
  • SEQadmin2
    16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
    by SEQadmin2





    NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...
    10-30-2026, 06:46 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by SEQadmin2, 11-12-2026, 07:59 AM
0 responses
27 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 11-05-2026, 09:25 AM
0 responses
35 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 11-03-2026, 11:54 AM
2 responses
56 views
0 reactions
Last Post kinpict.com  
Started by SEQadmin2, 10-28-2026, 09:57 AM
0 responses
175 views
0 reactions
Last Post SEQadmin2  
Working...