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  • soap2 and fastq

    Hi, I would like to know which of these three fastq formats is suitable for soap2:

    Sanger standard
        fastq-sanger 33–126 33 PHRED 0 to 93
    Solexa/early Illumina
        fastq-solexa 59–126 64 Solexa −5 to 62
    Illumina 1.3+
        fastq-illumina 64–126 64 PHRED 0 to 62[/B]

    thanks.

  • #2
    It seems only support 64? I have the same doubt, anyone knows?

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