Hi all,
I'm trying to extract what gene each of my RNA seq reads mapped to from the tophat acceptedhits_bam file. Ideally I want a list of each RNA seq read name and the corresponding gene it mapped to. Do any of you know a way to get this information from the bam file? Any info would be much appreciated.
Thanks,
Melissa
I'm trying to extract what gene each of my RNA seq reads mapped to from the tophat acceptedhits_bam file. Ideally I want a list of each RNA seq read name and the corresponding gene it mapped to. Do any of you know a way to get this information from the bam file? Any info would be much appreciated.
Thanks,
Melissa
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