Run Gene Pattern (GenePattern) from R
Simple question, but one I have struggled with due to weak R skills.
I have set up a local instance of GenePattern with no issues i.e. the GUI works fine. In addition, I can follow this tutorial that links R and Gene Pattern with no problems:
http://www.broadinstitute.org/cancer.../sections/gp_r
My problem arises when I go off and try to run other modules with my own code. Would someone be willing to share some example R code that can call a GenePattern module? I just can't find any other examples (specific or generic) on the web that will help me teach myself.
Thanks.
-Brian Muchmore
I have set up a local instance of GenePattern with no issues i.e. the GUI works fine. In addition, I can follow this tutorial that links R and Gene Pattern with no problems:
http://www.broadinstitute.org/cancer.../sections/gp_r
My problem arises when I go off and try to run other modules with my own code. Would someone be willing to share some example R code that can call a GenePattern module? I just can't find any other examples (specific or generic) on the web that will help me teach myself.
Thanks.
-Brian Muchmore
Comment