Hi,
I am starting to analyse my first Chip-Seq experiment (using an histone antibody).
I obtained thousands of peaks.
After using two filters (read number/peak and control sample no IP) I obtained approximatly 100 peaks per sample. Is it normal? Am I filtering too much?
Thanks
I am starting to analyse my first Chip-Seq experiment (using an histone antibody).
I obtained thousands of peaks.
After using two filters (read number/peak and control sample no IP) I obtained approximatly 100 peaks per sample. Is it normal? Am I filtering too much?
Thanks
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