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  • Zhan yueping
    Junior Member
    • Oct 2014
    • 6

    #1

    TCGA sample type

    Hi,
    I am using the TCGA. It is useful.But I had some questions about the Sample type.I got some information, like code tables report tells me that 01 means Primary solid Tumor. However it maybe should be more in detail, such as 06 means Metastatic, I don't know the cancer cell transferred before the surgery or after. And I don't know whether the metastatic sample is from the breast or not when the breast cancer sample type is 06. I also don't understand that 07 means Additional Metastatic, what dose the "additional metastatc" mean? I am very confused.

    I am looking forward to your answers!

    Thanks for your help!
  • m_two
    Member
    • Mar 2010
    • 50

    #2
    You can download clinical data collected by the BCR using the DAM:

    The Cancer Genome Atlas (TCGA), a landmark cancer genomics program, molecularly characterized over 20,000 primary cancer and matched normal samples spanning 33 cancer types.


    If you enter any "disease code" you can find all open access BCR data here:

    https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/"disease code"/bcr/

    The disease, tissue, and data codes can be queried here:

    The Cancer Genome Atlas (TCGA), a landmark cancer genomics program, molecularly characterized over 20,000 primary cancer and matched normal samples spanning 33 cancer types.

    Comment

    • Zhan yueping
      Junior Member
      • Oct 2014
      • 6

      #3
      Originally posted by m_two View Post
      You can download clinical data collected by the BCR using the DAM:

      The Cancer Genome Atlas (TCGA), a landmark cancer genomics program, molecularly characterized over 20,000 primary cancer and matched normal samples spanning 33 cancer types.


      If you enter any "disease code" you can find all open access BCR data here:

      https://tcga-data.nci.nih.gov/tcgafiles/ftp_auth/distro_ftpusers/anonymous/tumor/"disease code"/bcr/

      The disease, tissue, and data codes can be queried here:

      https://tcga-data.nci.nih.gov/datare...blesReport.htm
      Thanks u very much! It is helpful!

      Comment

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