can the output formats of a blastx file be changed after analysis done with the default -outfmt 0 format? Im using the stand alone blast 2.2.30 and already ran the program for a couple of days realizing later I will need a .xml file to be able to use in blast2go I don’t want to redo the whole thing but simply change formats if possible.
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Not really, no. Format zero is human readable plain text, it can be parsed but this is unreliable and not recommended.
The BLAST ASN.1 archive format (-outfmt 8 or 9) can be converted to any of the other formats using the NCBI Blast_formatter command line tool.
You can also convert BLAST XML output to the basic tabular format quite easily, e.g. https://github.com/peterjc/galaxy_bl..._to_tabular.py
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