Hi,
I am now doing some analysis about chromosome structure Viaration. Please help me about following questions.
1. Is there any method to sort out reads which mate is no mapped by IGV dispaly. I have dreamed that pair end all mapped reads are not displayed, so I could see what I wanted.
2.If IGV can't do it, is there any methods to sort out single mapped reads from SAM or BAM files. As to the sinle mapped reads,some single mapped reads may scatter around the genome, some may concentrated on one loci. the later situation may reflect a real SV. So is there any method to find concentrated single mapped reads.
I am now doing some analysis about chromosome structure Viaration. Please help me about following questions.
1. Is there any method to sort out reads which mate is no mapped by IGV dispaly. I have dreamed that pair end all mapped reads are not displayed, so I could see what I wanted.
2.If IGV can't do it, is there any methods to sort out single mapped reads from SAM or BAM files. As to the sinle mapped reads,some single mapped reads may scatter around the genome, some may concentrated on one loci. the later situation may reflect a real SV. So is there any method to find concentrated single mapped reads.
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