Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • soap3-dp using the -c device id option with multiple gpus

    Has anyone managed to get soap3-dp's -c option to function correctly? If so what is the format?

    -c [GPU device ID] Specify the GPU device for running SOAP3-dp;

    2 GeForce GTX 780 Off | 0000:07:00.0 N/A

    I've tried -c 7 , -c 0000:07:00.0 , -c 07:00.0 to no avail. soap3-dp just uses the video card with the lowest bus-id regardless.

    I have tried various formats of the device identifier based on the nvidia-smi output bus id.

  • #2
    Nevermind - SOLVED

    soap3-dp uses the device id as assigned by the CUDA driver installed.
    in my /usr/local/cuda/samples ran ./deviceQuery
    CUDA shows:
    deviceQuery, CUDA Driver = CUDART, CUDA Driver Version = 7.0, CUDA Runtime Version = 6.0,
    NumDevs = 3, Device0 = GeForce GTX 980, Device1 = GeForce GTX 980, Device2 = GeForce GTX 780
    Result = PASS
    device ids assigned 0 - 2.

    soap3-dp -c <0,1 or 2>

    Comment


    • #3
      Thanks for your reply, and fix!
      How does soap3 anyway performs compared to soap2 on cpu?

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Strategies for Sequencing Challenging Samples
        by seqadmin


        Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
        03-22-2024, 06:39 AM
      • seqadmin
        Techniques and Challenges in Conservation Genomics
        by seqadmin



        The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

        Avian Conservation
        Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
        03-08-2024, 10:41 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, Yesterday, 06:37 PM
      0 responses
      10 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, Yesterday, 06:07 PM
      0 responses
      9 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 03-22-2024, 10:03 AM
      0 responses
      50 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 03-21-2024, 07:32 AM
      0 responses
      67 views
      0 likes
      Last Post seqadmin  
      Working...
      X