Dear all great helpers,
I'm very naive to both unix, perl and RNAseq. I've download bowtie2-2.2.5 to my ~/bin folder and install it. I set path " export PATH="$PATH:~/bin" "
The problem is I cannot use command "bowtie2". It returns me :
command not found: bowtie2
The only way I can use bowtie2 is to write :
perl ~/bin/bowtie2-2.2.5/bowtie2
I also notice that my tophat-2.0.14 cannot detect bowtie2, as well. I'm wondering it should be due to the same problem.
Would you please suggest me what to do step-by-step? I must confess I'm very desperate to figure out what to do next.
Note : My perl command is in usr/bin/.
I'm very naive to both unix, perl and RNAseq. I've download bowtie2-2.2.5 to my ~/bin folder and install it. I set path " export PATH="$PATH:~/bin" "
The problem is I cannot use command "bowtie2". It returns me :
command not found: bowtie2
The only way I can use bowtie2 is to write :
perl ~/bin/bowtie2-2.2.5/bowtie2
I also notice that my tophat-2.0.14 cannot detect bowtie2, as well. I'm wondering it should be due to the same problem.
Would you please suggest me what to do step-by-step? I must confess I'm very desperate to figure out what to do next.
Note : My perl command is in usr/bin/.
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