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  • chariko
    Member
    • Jun 2010
    • 56
    #1

    Motif discovery Chip Seq LLR value?

    Hi,

    I am running a Chip Seq experiment and I am looking for "de novo" motifs using the Gibs motif sampling. When obtaining the motifs generated, I get a value of Log Likelihood Ratio (LLR) for each motif (4706, 2832 and 1721).
    Is there any way to know wether this values are OK?
    Should I only accept values above a threshold? Which threshold would be fine?

    Thanks in advance
    Tags: None
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