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  • BetterPrimate
    Member
    • May 2010
    • 15

    Filtering novel SNPs

    I have a file of SNPs identified by my exome sequencing project and wish to select out for investigation only those that code for missense/nonsense changes and are not in published databases (dbSNP, 1KG etc). Ideally I would also like to calculate SIFT/Polyphen score for the mutations. This is maybe optimistic, but is there a tool that will do this?
  • BetterPrimate
    Member
    • May 2010
    • 15

    #2
    Just looked at SeattleSeq Annotation which looks like it will do more or less what I want.

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