Hi all
I have some genomic coordinates, in BED format, that I want to check with ESTs. I tried to download EST data from UCSC, in bed format, but I couldn't. In the table browser, I selected "mRNA and EST" group and "EST" track, then I select BED as input format, but after a while UCSC sends this message: "procedures have exceeded timeout: 1200 seconds, function has ended.". I tried to download the ESTs via ftp too, but only I found them in FASTA format.
Anyone knows how to retrieve EST data from UCSC, in BED format, without using the table browser?
Thanks in advance!
I have some genomic coordinates, in BED format, that I want to check with ESTs. I tried to download EST data from UCSC, in bed format, but I couldn't. In the table browser, I selected "mRNA and EST" group and "EST" track, then I select BED as input format, but after a while UCSC sends this message: "procedures have exceeded timeout: 1200 seconds, function has ended.". I tried to download the ESTs via ftp too, but only I found them in FASTA format.
Anyone knows how to retrieve EST data from UCSC, in BED format, without using the table browser?
Thanks in advance!
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