Hi, I have downloaded tablet_linux_x64_1_10_05_21.sh and installed in our linux server. Do I need to use X-win to visualise the data (in linux server) from my desktop. Please let me know the steps involved. I have bam file from illumina reads (human). What are the other files needed for visualisation? Thanks.
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Hi Jose,
Thx for the response. Can you please be bit more clear as I don't understand. For example if my linux server name is G001, do I have to do as below from the my desktop (windows cmd prompt) C:\Program Files\SSH Communications Security\SSH Secure Shell>ssh2.exe -X -C seqGA@GA001?
I am still not getting the visualzation screen from my desktop. I have installed Tablet in my linux server. Thanks.
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If you can network map to the BAM files from your windows desktop (or put the files on a web server running on the linux box), then it won't really matter. Tablet (and any of the graphical viewers) will let you look at the BAM file without having to copy the whole thing to your local system.
IainOur software: Tablet | Flapjack | Strudel | CurlyWhirly | TOPALi
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Originally posted by seq_GA View Postwe have the bam files on a web server running on linux box. How to use Tablet in that case.
IainOur software: Tablet | Flapjack | Strudel | CurlyWhirly | TOPALi
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Hi Iain,
When I try pasting the below url as http:/qyz03/misc/test.bam in the primary assembly file or URL, the Reference/consensus file or URL becomes inactive and when I click open button, I get to see the following error:
Code:An error has occurred while attempting to open the provided assembly. java.lang.NullPointerException Input file(s) used: http:/qyz03/misc/test.bam
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Originally posted by seq_GA View PostThank you so much Iain for your help. I have missed something in the url and now I am able to load.Our software: Tablet | Flapjack | Strudel | CurlyWhirly | TOPALi
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Yes, I missed one slash in the url.
The correct url isCode:http://qyz03/misc/test.bam
Code:Unfortunately, Tablet no longer has enough memory to complete its current task and must be closed.
Last edited by seq_GA; 06-22-2010, 12:56 AM.
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