Hi, I have downloaded tablet_linux_x64_1_10_05_21.sh and installed in our linux server. Do I need to use X-win to visualise the data (in linux server) from my desktop. Please let me know the steps involved. I have bam file from illumina reads (human). What are the other files needed for visualisation? Thanks.
Seqanswers Leaderboard Ad
Collapse
Announcement
Collapse
No announcement yet.
X
-
Hi Jose,
Thx for the response. Can you please be bit more clear as I don't understand. For example if my linux server name is G001, do I have to do as below from the my desktop (windows cmd prompt) C:\Program Files\SSH Communications Security\SSH Secure Shell>ssh2.exe -X -C seqGA@GA001?
I am still not getting the visualzation screen from my desktop. I have installed Tablet in my linux server. Thanks.
Comment
-
If you can network map to the BAM files from your windows desktop (or put the files on a web server running on the linux box), then it won't really matter. Tablet (and any of the graphical viewers) will let you look at the BAM file without having to copy the whole thing to your local system.
IainOur software: Tablet | Flapjack | Strudel | CurlyWhirly | TOPALi
Comment
-
-
Originally posted by seq_GA View Postwe have the bam files on a web server running on linux box. How to use Tablet in that case.
IainOur software: Tablet | Flapjack | Strudel | CurlyWhirly | TOPALi
Comment
-
Hi Iain,
When I try pasting the below url as http:/qyz03/misc/test.bam in the primary assembly file or URL, the Reference/consensus file or URL becomes inactive and when I click open button, I get to see the following error:
Code:An error has occurred while attempting to open the provided assembly. java.lang.NullPointerException Input file(s) used: http:/qyz03/misc/test.bam
Comment
-
-
Originally posted by seq_GA View PostThank you so much Iain for your help. I have missed something in the url and now I am able to load.Our software: Tablet | Flapjack | Strudel | CurlyWhirly | TOPALi
Comment
-
Yes, I missed one slash in the url.
The correct url isCode:http://qyz03/misc/test.bam
Code:Unfortunately, Tablet no longer has enough memory to complete its current task and must be closed.
Last edited by seq_GA; 06-22-2010, 12:56 AM.
Comment
Latest Articles
Collapse
-
by seqadmin
Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.
Somatic Genomics
“We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...-
Channel: Articles
05-24-2024, 01:16 PM -
-
by seqadmin
The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...-
Channel: Articles
05-06-2024, 07:48 AM -
ad_right_rmr
Collapse
News
Collapse
Topics | Statistics | Last Post | ||
---|---|---|---|---|
Started by seqadmin, Yesterday, 06:55 AM
|
0 responses
12 views
0 likes
|
Last Post
by seqadmin
Yesterday, 06:55 AM
|
||
Started by seqadmin, 05-30-2024, 03:16 PM
|
0 responses
24 views
0 likes
|
Last Post
by seqadmin
05-30-2024, 03:16 PM
|
||
Comprehensive Sequencing of Great Ape Sex Chromosomes Yields Insights into Evolution and Genetic Variability
by seqadmin
Started by seqadmin, 05-29-2024, 01:32 PM
|
0 responses
29 views
0 likes
|
Last Post
by seqadmin
05-29-2024, 01:32 PM
|
||
Started by seqadmin, 05-24-2024, 07:15 AM
|
0 responses
215 views
0 likes
|
Last Post
by seqadmin
05-24-2024, 07:15 AM
|
Comment