Hi seqanswers,
Can anyone recommend an assembler for generating a single draft genome from a metagenome (Illumina 2500 pe reads) when a fairly good reference for the genome of interest is available?
My current approach is to do a denovo assembly using SPades and then rearrange the contigs against the reference using MAUVE, was wondering if there were any other options out there?
Cheers
N
Can anyone recommend an assembler for generating a single draft genome from a metagenome (Illumina 2500 pe reads) when a fairly good reference for the genome of interest is available?
My current approach is to do a denovo assembly using SPades and then rearrange the contigs against the reference using MAUVE, was wondering if there were any other options out there?
Cheers
N
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