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  • #1

    how to align 50bp pairend reads?

    Hi,
    I used to align 125bp pairend reads with BWA MM (-T 20 -K 30 -t 4). Now I downloaded a SRA data from NCBI, its pairend read is 50bp length. So, is the same configuration I used suitable for 50bp reads? Who can tell me other software more suitable for my purpse?
    Thanks!
    Last edited by hujiacun; 05-11-2015, 06:33 AM.
    Tags: None
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