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How to add CADD score to variant annotation using dbNSFP

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  • How to add CADD score to variant annotation using dbNSFP

    Hi there,

    I want to add CADD for the variant annotation, and easily directed to dbNSFP. According to its official site (https://sites.google.com/site/jpopgen/dbNSFP), dbNSFP has integrated CADD.

    But when I run snpSift using dbNSFP, CADD is not in the output (while others like SIFT, Polyphen have no problem to be output).

    Any suggestion?

    Thanks in advance!

  • #2
    cross-posted https://www.biostars.org/p/141989/

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