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  • Calle
    Junior Member
    • Feb 2009
    • 5

    #1

    Mosaik Jump database creation freezes

    I am running:
    MosaikJump -ia Genome_cs.dat -out Genome.15 -hs 15

    It all looks fine up until it writes the jump database, i.e. it freezes at a certain percentage of completion.

    ###########################

    - retrieving reference sequence... finished.

    - hashing reference sequence:
    100%[====================================] 3,178,048 hashes/s in 05:46

    - serializing final sorting vector... finished.

    - writing jump positions database:
    25% [======> ] 0.0000 hash positions/s ETA 0 s /

    ###########################

    for another genome (bigger one) i am creating a jumb db it only reaches 10% and then freezes.

    ###################################

    - retrieving reference sequence... finished.

    - hashing reference sequence:
    100%[====================================] 2,928,603 hashes/s in 15:30

    - serializing final sorting vector... finished.

    - writing jump positions database:
    10% [=> ] 0.0000 hash positions/s ETA 0 s \
    ##############################


    Any suggestions? What ballpark of RAM is suitable for a mammalian/vertebrate genome.

    Cheers!

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