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finding GO associations
I have GO annotations for a non-model organism)and I did an enrichment test using the goatools script find_enrichment.py. There does not seem to be a way to print a list of genes associated with the enriched GO terms. So, given a GO term, how can I make a list of all genes associated with all child terms? As input I have the gene_ontology obo file and my gene_association file.Last edited by mike.t; 05-19-2015, 07:17 AM.
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The complexity of cancer is clearly demonstrated in the diverse ecosystem of the tumor microenvironment (TME). The TME is made up of numerous cell types and its development begins with the changes that happen during oncogenesis. “Genomic mutations, copy number changes, epigenetic alterations, and alternative gene expression occur to varying degrees within the affected tumor cells,” explained Andrea O’Hara, Ph.D., Strategic Technical Specialist at Azenta. “As...07-08-2024, 03:19 PM