Tweet
I have GO annotations for a non-model organism)and I did an enrichment test using the goatools script find_enrichment.py. There does not seem to be a way to print a list of genes associated with the enriched GO terms. So, given a GO term, how can I make a list of all genes associated with all child terms? As input I have the gene_ontology obo file and my gene_association file.
-
Last edited by mike.t; 05-19-2015, 07:17 AM.
-
Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.
The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
...06-02-2026, 10:05 AM -
With the launch of new single-cell sequencing platforms in 2026, the field stands at an exciting inflection point. This article surveys the most impactful advances in the field and discusses how they’re reshaping research in cancer, immunology, and beyond.
Introduction
Single-cell sequencing technologies have undergone remarkable advances over the past decade, transitioning from low-throughput experimental approaches to highly scalable platforms capable of...05-22-2026, 06:42 AM