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Avalanche Workbench is a visual data analysis & DNA sequence data mining tool for BIOLOGISTS.
It offers a visual graphic interface through which you can search (eSearch, eLink, eSummary, eFetch, Blast) biology databases such as NCBI or get visual access to sequence processing tools/servers.
The tool consists of smaller bits (called 'tasks') that can be serialized to form a quite complex pipeline.
For example, with a couple of clicks, you can perform a NCBI search for 'Escherichia coli' in the taxonomy database. In minutes the program will download in your computer all genomes related to this organism.
All this is VISUAL (and freeware). No need to program any script for this.
The following 'tasks' will be available by the end of the week:
Blast is next of the list (to be released somewhere in the middle of June).
Download link
Constructive feedback is highly appreciated !!!!
It offers a visual graphic interface through which you can search (eSearch, eLink, eSummary, eFetch, Blast) biology databases such as NCBI or get visual access to sequence processing tools/servers.
The tool consists of smaller bits (called 'tasks') that can be serialized to form a quite complex pipeline.
For example, with a couple of clicks, you can perform a NCBI search for 'Escherichia coli' in the taxonomy database. In minutes the program will download in your computer all genomes related to this organism.
All this is VISUAL (and freeware). No need to program any script for this.
The following 'tasks' will be available by the end of the week:
- eSearch
- eLink
- eSummary
- eFetch Taxonmy
- eFetch Protein
- eFetch Nucleotide
Blast is next of the list (to be released somewhere in the middle of June).
Download link
Constructive feedback is highly appreciated !!!!