FusionCatcher output

mhimanshu

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Join Date: May 2015

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#1

FusionCatcher output

06-17-2015, 06:48 AM

Hello,

Is there anyone who worked with FusionCatcher for finding the fusion gene? My gene of interest is in the "Preliminary set of fusion genes" (one of the output files from FusionCatcher) and it has only one Count_paired-end_reads. Is it possible to extract that single read? (I know the reads of final fusion genes are in the *.zip files).

Can anyone help me please

Cheers,
Himanshu
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ndaniel

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Join Date: Feb 2009

Posts: 33
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#2

06-23-2015, 11:56 PM

Originally posted by mhimanshu View Post

Hello,

Is there anyone who worked with FusionCatcher for finding the fusion gene? My gene of interest is in the "Preliminary set of fusion genes" (one of the output files from FusionCatcher) and it has only one Count_paired-end_reads. Is it possible to extract that single read? (I know the reads of final fusion genes are in the *.zip files).

Can anyone help me please

Cheers,
Himanshu

The last release of FusionCatcher (that is v0.99.4c) allows one to get the support reads for preliminary candidate fusion genes, by using the command line option "--reads-preliminary-fusions".
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FusionCatcher output

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