I've been using Trimmomatic 0.30 with great success, but today I got an error message for 8 of my 9 libraries and I have no idea how to fix it.
Exception in thread "main" java.lang.StringIndexOutOfBoundsException: String index out of range: 0
at java.lang.String.charAt(String.java:658)
at org.usadellab.trimmomatic.fastq.FastqParser.parseOne(FastqParser.java:47)
at org.usadellab.trimmomatic.fastq.FastqParser.parse(FastqParser.java:93)
at org.usadellab.trimmomatic.TrimmomaticPE.process(TrimmomaticPE.java:254)
at org.usadellab.trimmomatic.TrimmomaticPE.run(TrimmomaticPE.java:347)
at org.usadellab.trimmomatic.Trimmomatic.main(Trimmomatic.java:23)
Any help would be much appreciated.
Exception in thread "main" java.lang.StringIndexOutOfBoundsException: String index out of range: 0
at java.lang.String.charAt(String.java:658)
at org.usadellab.trimmomatic.fastq.FastqParser.parseOne(FastqParser.java:47)
at org.usadellab.trimmomatic.fastq.FastqParser.parse(FastqParser.java:93)
at org.usadellab.trimmomatic.TrimmomaticPE.process(TrimmomaticPE.java:254)
at org.usadellab.trimmomatic.TrimmomaticPE.run(TrimmomaticPE.java:347)
at org.usadellab.trimmomatic.Trimmomatic.main(Trimmomatic.java:23)
Any help would be much appreciated.
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