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  • samilar gene ID in counts file

    Hi,
    Right now I came across such a question:
    When I did DE analysis using RNA-seq counts data, I found two similar gene IDs like (PR and PGR) in two different rows with diffenent numbers of counts.
    So how can I tell which gene is the official gene name?

  • #2
    If these are human genes then check here: http://www.genenames.org/

    Comment


    • #3
      Originally posted by GenoMax View Post
      If these are human genes then check here: http://www.genenames.org/
      then if I cannot find the specific gene in the webseit, does it mean that gene ID might not be official name, or even a typo?

      Comment


      • #4
        Without knowing the full context of your question .. if it is a human gene and you can't find it on this site then it is not an official name (or it may still be under consideration for approval).

        Comment


        • #5
          Originally posted by GenoMax View Post
          Without knowing the full context of your question .. if it is a human gene and you can't find it on this site then it is not an official name (or it may still be under consideration for approval).
          Well, I got some answers for this 2 gene ID names.
          "The files list three transcript names for each of these proteins.
          PGR = AB084248,AY212933,NM_000926
          PR = AB085683,AB085843,AB085845“

          it seems they are alternative splicing variants. Is it possible? What does this mean?

          Comment


          • #6
            Originally posted by shirley47162928 View Post
            Well, I got some answers for this 2 gene ID names.
            "The files list three transcript names for each of these proteins.
            PGR = AB084248,AY212933,NM_000926
            PR = AB085683,AB085843,AB085845“

            it seems they are alternative splicing variants. Is it possible? What does this mean?
            Probably. See this record for the 10 known transcripts of PGR (http://useast.ensembl.org/Homo_sapie...24;redirect=no).

            Comment

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