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  • hero536
    Junior Member
    • Jul 2015
    • 2

    #1

    How to use BWA to read alignment?

    How to use BWA to read alignment? DO you have some protocol or practical experience? Would you like share some practical experience to me? Thank you!
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    See the bwa manual page linked in the post for additional information otherwise basic steps are in this thread.

    Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

    Comment

    • hero536
      Junior Member
      • Jul 2015
      • 2

      #3
      Thank you very much!

      Comment

      • GenoMax
        Senior Member
        • Feb 2008
        • 7142

        #4
        Remember to scan/trim your data (if needed, for adapters etc) before you align.

        Comment

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