Hi everyone,
I am trying to find out if there is any tools out there to transform a VCF file to make input file for Rqtl or similar tool.
Basically, I have WGS for RIL population (180 lines) for which I did variant calling using samtools and have a VCF file that i need to parse it to get an input file for linkage/QTL mapping tools such as Rqtl or QTL cartographer. Please suggest if there are any tools. Any help is appreciated.
Thank you.
-Raj
I am trying to find out if there is any tools out there to transform a VCF file to make input file for Rqtl or similar tool.
Basically, I have WGS for RIL population (180 lines) for which I did variant calling using samtools and have a VCF file that i need to parse it to get an input file for linkage/QTL mapping tools such as Rqtl or QTL cartographer. Please suggest if there are any tools. Any help is appreciated.
Thank you.
-Raj
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