ReadDepth manual or example

[papori]

Hi all,
Do u know where can i find the manual or normal example of ReadDepth tool?
not the same example as here:

https://github.com/chrisamiller/readdepth

Its not detailed enough...
it R package, but i cant find it..
Thanks,
Pap

[papori]

Any ideas for how to use this package?
Thanks,
Pap

[GenoMax]

Have you looked at the text here: https://github.com/chrisamiller/read...n/readDepth.Rd

If that is not detailed enough you should email the author directly for additional help: https://github.com/chrisamiller

[papori]

Have you looked at the text here: https://github.com/chrisamiller/read...n/readDepth.Rd

If that is not detailed enough you should email the author directly for additional help: https://github.com/chrisamiller

Hi GenoMax,
Yes, i saw this already and it's not detailed enough, at least for me..
I sent email to the author and waiting for his response..
I was sure that every package in R must have vignette/ or at least simple manual..

Thanks,
Pap

[papori]

Ok, he didnt answer me yet..
In the meanwhile, can u reccomened on a easy to execute tool for exploring the read depth over the human genome?
Thanks,
Pap

[GenoMax]

How about genomecov (http://bedtools.readthedocs.org/en/l...genomecov.html) or coveragebed (http://bedtools.readthedocs.org/en/l...overage.html)? Those should work for what you are trying to do.

[papori]

How about genomecov (http://bedtools.readthedocs.org/en/l...genomecov.html) or coveragebed (http://bedtools.readthedocs.org/en/l...overage.html)? Those should work for what you are trying to do.

ohh cool!
Thanks!! I like bedtools!