SummarizeOverlap taking a long time

[DazedandConfused]

Hi,
I'm fairly new to R and bioinformatics and I'm working on a project with DESeq2 in R studio. I've been trying to run the "summarizeOverlaps" function on 12 bam files. However, I let it run over the weekend and the process still hasn't finished running. I don't think it's frozen, but i'm not sure if I should try and restart it again. Does anyone know of a faster way to work around SummarizeOverlap?

Thanks,
Lilly

[Michael Love]

You can also try featureCounts from the Rsubread package.