Hey,
I have a blastx xml output. I want to convert this blastx back into a fasta file for downstream analysis. However, the xml contains only protein sequences since it's a blastx output. I have the original fasta I sent into blast. Is there a way I can "merge" these two files together? I want to take the annotation from the xml and append it to the original fasta's sequences.
Is this possible via command line? Right now I'm doing this by importing my fasta and XML into blast2go and exporting the fasta w/ the new header information, but blast2go gets really slow with very large datasets.
I have a blastx xml output. I want to convert this blastx back into a fasta file for downstream analysis. However, the xml contains only protein sequences since it's a blastx output. I have the original fasta I sent into blast. Is there a way I can "merge" these two files together? I want to take the annotation from the xml and append it to the original fasta's sequences.
Is this possible via command line? Right now I'm doing this by importing my fasta and XML into blast2go and exporting the fasta w/ the new header information, but blast2go gets really slow with very large datasets.
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